NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1003610

Scaffold Ga0209337_1003610


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1003610 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10891
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011846Metagenome / Metatranscriptome286Y
F022313Metagenome215Y
F023484Metagenome210N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100361011F023484N/AMDTEPNPLHLLPNAPMNINTKDGGFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYISTFNSIKEGDGLMLSNSCDPDQVIDGDEVAKCKTFIRNHS
Ga0209337_100361012F022313N/AMQNLYSESLMTYHYQPQQEYELAKLERILKELQSIVEREGNRHMMDEHLTHSMRDLLENEIIPMLEAEVYYDPTPQTSYDFFHQ
Ga0209337_100361020F011846N/AVKLSAGFIESLEKENDGSSSKDNYLGYTKLEQGRPANFALLEQDPLEYWLVWAEAKASGSMKPFRFMGQPSSDEIDLELGSEYVQSMNYDKTAIRKPQQCLTWPVYNWDMNRVQVLEVSHISLARQFAKYGLNKKYSKNLLDWDFELSKIKADMVRYELLIVPRDEDEHDETQMQMAWLQAQKGRFDLNRMVTGEDPFSEG
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