NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209109_10030783

Scaffold Ga0209109_10030783


Overview

Basic Information
Taxon OID3300025160 Open in IMG/M
Scaffold IDGa0209109_10030783 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado, USA - sediment 10ft 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2890
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032948Metagenome / Metatranscriptome178N
F055120Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209109_100307831F032948N/ASPGRYVMKDLYLFSCKREILARKLESLPITIPLKPIRPETALRRALSLNLDQKRYAFEESSFEKVNDKPVQIILSREALSNGDIDAGVGKAYVERGRVEVNTLYPEIRNSLENGFRFHMETAITRDLSIVVTKYLAACMGIPVRPKNGEIYFALERYIPEVLELMTVIDSLGQESTIRVSPVVGDEVQKVVERAHDHFRTSVEHLMRLTEEISDETHTKTLNTRLKDARDLLEQAAAYEIGLGMELDEVKRNIQEAKSKISERLLGKPAVSNHPQEPASATVYLARSTGQLDLIR
Ga0209109_100307835F055120N/AMDTESKGLPDAKTLFEQMCIDGTRFQAHKFVSAVESYEGLREAADKGGEITPNYFALLSDVFSAFFQNKPRLKQNPPRETEENREIMDTALGLKEYEELHTVSRLDFFASAAATRAFSDQIIKLIREKKEDEKTNPEKGKVNNGPLGIDADTLRWAIRRSLKKGLEEAQEAKQAVETFGRREGGIQRIPLTEQFRL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.