NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1062791

Scaffold Ga0209645_1062791


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1062791 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1272
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001205Metagenome / Metatranscriptome748Y
F055651Metagenome138Y
F071783Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209645_10627911F055651GGAGMDRYRVIAKFAKQNDWKHGLELGVWVGVTTFFMMRETDVKMICVDAWEVQEDNPEYDWQF
Ga0209645_10627912F001205GAGMFKDVIGDWPTHQRFILTSCDDKYFNRYFPRFYKTYRQHWQLPIHVHVIDPSDKSLQRLTDLNVTYSHCKTDTKVLKWQYSYETYCQAQRFILLGHNLLTNQSVIVADVDSYALKDPSNSQKHILESDMAFTEYNGRLMATFCNFHYGRKTLAKQSAVKMQELIEQTDTIGVDQLVIKEIFKSLPYNKLKHEEWIRHFDNRTDVDAKKHNQCLIYHEKGTRGKIKTVETSWTDIE
Ga0209645_10627913F071783N/ANVAQNKNWQTYFTDYEINQANLNPLYATGTDSDKSAIIDQVLANSGLPDVLDATDLISVANKAKRDLRIDTTNFDSFTAEEIIEKSCVQLGITTSNRTITALSQTLLNNMNQNDRDEIARELDLNEDSDTLS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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