NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1043743

Scaffold Ga0209645_1043743


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1043743 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1598
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071642Metagenome122Y
F098054Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209645_10437432F098054AGGAGMKVKLGQIVSSVDAFNKVAQQPMKASVSFQVAKNLKTLSEELAVYEQSRGDLIRKYGKENKEDGSFAIEPNSEELPKFQKELGELLNVDVDLNGFKQIKLSNLSKCELTPQEMASLEFAIQE
Ga0209645_10437433F071642AGGAGMANLHKYTSTEALNISYSSDFKIQAAWSISSSEVTKDVSGYHTIFLQTDEDIYYGFSDSTNDILGTAANNIYIKGGDTIYQLAVPYGVGDGNGSIYLHALRKTSSDATARIVFT

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