NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1030716

Scaffold Ga0209645_1030716


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1030716 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1978
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030729Metagenome184Y
F032243Metagenome180Y
F034754Metagenome174Y
F066694Metagenome126Y
F092880Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209645_10307162F034754GAGGMKVGDLVDINQKRGTGSFEKITPRGLGVVVSFEELEDLHYPNIGSFNLGPIVHVLLNTGETEGFAPQSLEVVCESR
Ga0209645_10307163F092880GGAGGVKAGDLVQYNSRLLLVLRPNPDEYGYAAGWWQCMEVGTNRVRIYSPTQLTVIKTEAQFYL
Ga0209645_10307165F030729GAGGMKVTKKKIEAILQKDERMKWVTLWYDRSAKQWVFAGGDACMWESSGTLTPRLDMLSVEEWVDLAYELAGRKRYV
Ga0209645_10307166F032243GGAGGMSSNYEMYGAEEGWEYPQVGDLVEIASKSSLKTEVGVVVEPNEYIKNDHLWAQVLLNNGKMKVLPKRELKVIQRGEE
Ga0209645_10307169F066694AGGVKADLGIRAGDLVRHNSYKDLLGIVVEVNLNYAGNPVAVAWTGRNPYGFGKNSIHHPDRLEVIRESR
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