Scaffold Ga0209645_1025459

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209645_1025459

Scaffold Ga0209645_1025459

Overview

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1025459 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2216
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007531	Metagenome / Metatranscriptome	349	Y
F034397	Metagenome / Metatranscriptome	175	Y
F071648	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10254591	F034397	AGGAG	MTGTRLTDIVFDRHEDFLYEDSRAMKLTPYVMAERCIQVEAWKIYDDEKIGDYSTLTYILEG
Ga0209645_10254593	F071648	GGAGG	MKRTFTCTVCGKKFIHKKPDTLVGKLGIIPVNLCKKHFKAVMKHDELMLNDHRKVA
Ga0209645_10254598	F007531	N/A	MFKKIEKQILEFAKDTGLTERREIVHGTLYVKLHEEKECDHFHKVIRTFYKDQINNEGGVNMYAVGDEFAFDFVPEDREAPVFSDEEYSGKEGMMPDDIDKGIWSEFAEEEMFNNMPDEVDTLMNLEAEQKRGK

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