| Basic Information | |
|---|---|
| Taxon OID | 3300025151 Open in IMG/M |
| Scaffold ID | Ga0209645_1021302 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2464 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018540 | Metagenome | 234 | Y |
| F052601 | Metagenome | 142 | N |
| F068849 | Metagenome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209645_10213024 | F018540 | N/A | MDKFRVDWWDNFNDELYCNYLIQKDEQMNTYRILYKTYKGNNTDAPVVQAVKYVQAYDKTEARKLFNLWQGLIISIDKV |
| Ga0209645_10213025 | F052601 | N/A | MNMNYEIEIEYYDQDGCIFYIGETPYEVELYIETRTFDEPDSYNSFTDTIKYVQLEERYYRVDQSTLRCDGINYYDDEDICEQLEEILNG |
| Ga0209645_10213027 | F068849 | N/A | MTRLEKLNQLTKIDESIKYYEKLIDDRHWSNEFGVGQVMQTIRQKNDHEIDIYTRCIARLNERFRKLVLKLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |