Scaffold Ga0209645_1007642

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209645_1007642

Scaffold Ga0209645_1007642

Overview

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1007642 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4510
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (21.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F016811	Metagenome / Metatranscriptome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10076421	F016811	N/A	QMIYDIGVRLAWKKKKGNGYVNMYLGTKDRPFQFVTRAKDLDAINRNPEMIAKMMAYVGATAKSVYDFYVSKEFYRKEVSRSFAHKEEDYTKEFGE
Ga0209645_100764210	F008384	GAG	MPRYDKALIEKEAILSAQQGKITEELGKFILQRSIEIASSAFVTDGNKELQQSLIDVAVMRTCEKFLHYYEQGKSAANLVISIIYSTMTNKIVSLNHSDVYGHRIKGYLTYIENGQSVTKLKRYIKDDYLSEKL
Ga0209645_10076428	F013231	N/A	MVSEKKNYQTCKLIKNRIDLYLFEMARLFTYIGTDSTVEEIQEAYKKEKEYIELIAELDPDKADRLRSSY

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