NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1004009

Scaffold Ga0209645_1004009


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1004009 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6622
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000413Metagenome / Metatranscriptome1169Y
F000983Metagenome / Metatranscriptome814Y
F003612Metagenome477Y

Sequences

Protein IDFamilyRBSSequence
Ga0209645_100400914F000413GGAMLIDESKLINYLWQNKALEFKYVTHRHRLDCYADTKYLMLGKLKYPTIFGKKGRVGFMELYISHMINKKLQLAKGST
Ga0209645_100400918F000983N/AMKSYFILDCENQQRIVDSLYGYYIGITANREPKEFWNHLSRKEILDYFSVPNNPTKQWFDSLGLKVRDMSFTIYNEHIGTDIHRDEPPVIAKINFPILNTKDTYNVWFDDHGTEIDRVECDKPIVLRSDILHTVEIGKSAKYPRIQFSFCFYDEPLH
Ga0209645_10040098F003612GGAMATPNNFKVTTAIGETDNYIGADISFFHITLKDNSASAVDVRTELGYDETVHNVIRAILDRGTMVHQRIDNAATGRIDIAMERTGWTASTLQTAIRDLGATVGVNDKDLRGTVVTETELKLDNS
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