NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1022013

Scaffold Ga0209756_1022013


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1022013 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3656
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017322Metagenome241Y
F081436Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209756_10220131F017322N/AIMENWRKFLKEGITDVVYHYTSGINKAAKILEDNKFMASGGFTKDVESELGKGKLYYFSTARTPVNAYTGTYPQGAIFKLDGRALSQKYKGVPLDYWATAKRSSKRPALISKYGKDAPSDSFEAEDRILLDEPYIDDADIYIDEIHFAVPLYSKGKDYFSGEMETKTSKYIEWYNIEGIEKSVAVAEQRGIPYYIHVDKSTWPHVEVGKKKAFTSLSDFMQEIEKSGTEITGKPESYGKETAAAKKRKTFGEDEVFLFVQAAHDILAGKEQFEGAGVKGDEDRTDEEARKAKGKQFFRALAGAPDRRGRFVRDIDNPLHNISSKPKARGTLEMLASLMRSTKQKTIKDLENYLNQVYKNNHPDGDPTGYRDS
Ga0209756_10220135F081436AGTAGGMKITKQELRQIIKEELQEAFRMEADFKPGTMVNWNVLAKVVKTTSSGRQKVDYDRMTMTGAVQELVRSGSDVGGVAIVLDPDGNTHEVEISELSHA
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