NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1001593

Scaffold Ga0209756_1001593


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1001593 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20774
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (95.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046990Metagenome150N
F074049Metagenome120N
F084450Metagenome112Y
F092880Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209756_100159313F074049GGAGGLNNVEHKRELEYDIWQPSEIKGAPDLNVRVRLLPLSERAQQRVDEYGDVMKLMHISHSGPFECNEEQILVMSLNEKWQGWFRNGTDVDFELT
Ga0209756_100159335F092880GGAGGVKPGDLVKYNSRLLLALGPNPNEFGYCDGWWRCAEVGTNRVRIYSPHQLTVIKTEAQFYL
Ga0209756_100159343F046990GGTGGMTVIRRRLKVGELVEVHKDIDPLDDWSKSKGMAVILDTDPDPERPGLLEIRYVKPRGLPEEQLPIQKLINNFSLTRVK
Ga0209756_100159345F084450GGAGGMKQENSMTEKEMIEAWVKKNKPKRYTHGERPEGMEVPTISNWGRGRRKKSKAESQAEKDAEKG
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