| Basic Information | |
|---|---|
| Taxon OID | 3300025137 Open in IMG/M |
| Scaffold ID | Ga0209336_10002557 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-32 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8601 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (10.53%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.2833 | Long. (o) | -134.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005132 | Metagenome / Metatranscriptome | 411 | Y |
| F008384 | Metagenome | 334 | Y |
| F013231 | Metagenome / Metatranscriptome | 273 | Y |
| F016593 | Metagenome / Metatranscriptome | 246 | Y |
| F024348 | Metagenome / Metatranscriptome | 206 | Y |
| F052949 | Metagenome / Metatranscriptome | 142 | N |
| F063073 | Metagenome | 130 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209336_1000255711 | F008384 | AGTAG | MPRYDKLLIEREAMLSVQQGSLTNELGIFILQRSKEIAASAFVTDGNNELKQALIDAAVMRTCEKFLHYYTQGKSAANLVISIIYSTMTNKIVSLNHSDVYGQNIKGYLTYIEDGESVTKLMRYIKDDYLSEKL |
| Ga0209336_1000255712 | F024348 | N/A | LTPKRESDYAYNIKMIFEEYYEDLTDAEANLILDIYRVIDLLVYNHEPVTLVRLGFELSINTQELSDYLPIIITILNKVEDQYAEVRQVAD |
| Ga0209336_1000255713 | F013231 | N/A | MINQRNYQTCKLIKNKIDRYLYEMANLFANIGTESTHEEVAEAYRREAEYIELIVELDPEKGERLRL |
| Ga0209336_1000255717 | F063073 | N/A | MNLTAEEKNNTPIHSLILDRRKAFAELIRAFLRFNVPSAKKVEVMPNGSLCINDVIFKVDISDYTGIEGGFGYIFLNPSSGRLVIEKDNVKKIYKLEVDLLDE |
| Ga0209336_100025572 | F052949 | N/A | MKGNIFISVPASDISNALPTSITRYDWVENTYNEEGEVESSNKVHPTWEQFGIRNSGLFGSPVAVADVVVYEMEASWLDSEVSALIALGDGQSAPNYTVYTNAEVRKFIADNTAEL |
| Ga0209336_100025573 | F016593 | N/A | MKRLKTGVVNTLSFVKLSTFTVNSFDVTLDKVVGTGSLTITNLTDLNNLDSCKDFIQINIDLLSNDIEGGEYELTITNDGDSYKYLTEVQDYKVTQTGSGIYGSTVRFTDL |
| Ga0209336_100025575 | F005132 | N/A | MVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQYTSIQDLLGTCLYENIEAKVVAQSLNTAEQGLFKLVKYTLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISTTVDSKLSYINKRITNYILDNAAIKAIATADGCDNDLFNEQDNYQGDVFYPQDGITDKFCEDGGVTYTP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |