NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10001586

Scaffold Ga0209336_10001586


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10001586 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11065
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014835Metagenome / Metatranscriptome259Y
F095742Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209336_1000158611F095742GAGGMILELAAIVSTVNAATSALNKAAGATSDIQQISAFLGSLGEAQHDLQKIKNTQSLSASDAIQHQLTQKQINDTLDEVKDIFLVSGNTQLWDNAMKAMADARVARQNQINKSIAKRKARIKELREAGVIILIAVVVVPLALFALLYTLIN
Ga0209336_100015863F014835GGAMDSKEYRETLAKQEDLNWDGNPDLDAEYECEEEKDLDELVVKYFYD

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