| Basic Information | |
|---|---|
| Taxon OID | 3300025137 Open in IMG/M |
| Scaffold ID | Ga0209336_10000715 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-32 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16766 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (11.76%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.2833 | Long. (o) | -134.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014147 | Metagenome / Metatranscriptome | 265 | N |
| F021987 | Metagenome / Metatranscriptome | 216 | N |
| F051922 | Metagenome / Metatranscriptome | 143 | N |
| F065800 | Metagenome / Metatranscriptome | 127 | N |
| F070126 | Metagenome / Metatranscriptome | 123 | N |
| F080086 | Metagenome / Metatranscriptome | 115 | N |
| F084839 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209336_1000071519 | F021987 | N/A | MNKTSTQIKDQLVRKGASEVIEEALKAGVFFSDIDEMDEWIKDEFDYNMLGHTDNDYDEVMNIMMEEVHDRVYEFFNQVQADILHKAFLVQKSLEHDTDL |
| Ga0209336_1000071524 | F065800 | N/A | METKFIPTNPEELASFDSVLKEFNTINDSAYVFTNSYDSNYDVYVGSESTADGYEIWIINVDNEGPIISENVYYYEPRAYDIFNHIGGGWRDDLIVYSELGLDEIEEYMIGELCTNYDNYLNELEDAE |
| Ga0209336_1000071525 | F051922 | N/A | MKRLSLYERLNPDVKAKLIANQLDYEFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPTDTSTMLRGDSNLIQPQNEVI |
| Ga0209336_1000071526 | F014147 | N/A | MTTIKNTFEQQLHEKFGVNVMSMEGIHSAILVDGAHGTDYISYHDTSPDWVFGVHPKLQAFIDAHGWECEWQNSEVLNLYPGHDWTGDFSEAQLVSHWNAMCDHITAPQDHIYCNDDEAFEMLQLTIRQTVAASKNDRYNFDDKWLTLDGYGNPMSFNSLLNYIDVPELEEHLIAHALI |
| Ga0209336_1000071530 | F080086 | N/A | MTNITAMEVSIEALANECAQHDFAFMENPWRQRHWSNEYDRRARIFTMLERLGHSSKAIEVYNTYAPAFAKRPLRSKYY |
| Ga0209336_1000071532 | F070126 | N/A | MNLQELYTYCRGVIEKYPALRDDVMRHFALAEMECEDDASSEEHEVELSLTDIDDLVADHEMQMGLQK |
| Ga0209336_1000071533 | F084839 | AGG | MNRPYKYITVLDYSNGQVYLYDYDATEMPNAADFVKSRHDLDDVNYMVHQYTPALWTKDVYYCTREQAYELTNED |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |