NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10000071

Scaffold Ga0209336_10000071


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10000071 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47321
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (88.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025997Metagenome / Metatranscriptome199Y
F043378Metagenome / Metatranscriptome156Y
F093837Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209336_1000007117F093837AGGVDIETLDTAYQGDKDFFWLCYNGRIPDYWISKDKYTDYSKFLELFDNPPKSHVDYGGAVIQYKDDDFTYPYNVDQQGLYLEWIKKSIEKFQFKNVKFKKCWWLTYPKNTFSGLHTHEDRGQRTMTCVMFLNTISVSTETPLNGKLKAITMNPVTGELVSDMIKCIAGDVVVMDGKVYHGVYPTLEERKVFVVDFTYDVEIN
Ga0209336_100000717F025997AGGMATVINDKFQAQNGFESPNFTVDTAGKLTTPVIDVQSILLNGTPFVAYVPPADDAGDDTGTQVSNSFDSLAVTGGIFKVNYLGNTALSVINGRLTINSIGAIPGSIDNVEIGYNTPSQIRVHTIDMAANPDSTASTINMNGASVKGDVNIANNVVLVNQPTIGTHATSKGYVDATATALAVAFGA
Ga0209336_100000719F043378GGAGMNKLLTNLFSKGANNTIHLPDRSSFSYRGSWIGVQYNTVVDSFHLGEYSSAVYQITVEFDSNEKEIMQLSVVARPDRAVANIFGRSSINQELVTLSVTVDASTVKINASPTSSIYAGAKLIFHATYAKTIHQLTPPAIVADVSSVVESGVNTFDATTTYFDNTNITFDKV
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Institute for Fundamental Biomedical Research
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