| Basic Information | |
|---|---|
| Taxon OID | 3300025133 Open in IMG/M |
| Scaffold ID | Ga0208299_1000317 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 46473 |
| Total Scaffold Genes | 84 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (73.81%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F058127 | Metagenome | 135 | N |
| F067702 | Metagenome | 125 | N |
| F074857 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208299_100031736 | F074857 | AGGA | MNTPKNYRNPQSFRELAKQAQKLSEMAYLEACQPKKLRNQALMNHCYKHAKTLTKTLVAAGYWKNSVISLG |
| Ga0208299_100031770 | F058127 | N/A | MVGDLVEYFYTFDSNSIDPWTDGNKICFIILETKDENYVWAKPQFPLNEQGKSVLAIARDSKYPGNRDGCWLLESKRCKVINGSLRS |
| Ga0208299_100031775 | F067702 | N/A | MSVCIDNFPSFQWKINIHDDECYETTVSGSFGPFNSVDVFTEGNKHVVVSEFGGEGKWDEECDDFQLQKTLEVLSQTFNYEQQRWVELINDGVSHGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |