NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209232_1029499

Scaffold Ga0209232_1029499


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1029499 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2106
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002344Metagenome / Metatranscriptome568Y
F027242Metagenome / Metatranscriptome195Y
F053219Metagenome / Metatranscriptome141Y
F079320Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209232_10294991F079320N/AWTQFYQERGNKDQIRKCQTQIAELKKAYNKTKSKK
Ga0209232_10294992F027242N/AMKDTNAIEKALKDKCKKEIEGVVNVFMNELEVKIRGEYNSSNYYDFIGPNGNGKASFHVMGTEQLKNVLLRMIQNAHLESMVAVKSKELIKKLELV
Ga0209232_10294995F053219N/AMKYAIFDMDDTLCTLQYRKYKATKSGSNKIDFKILFDSKLVKHDLPQGHVVELAEILSMFNTRIIIMTARPYYMEEATKQWLKDHRVPYFKLIMKEKNKVFQKSSIWKESKLQELLQDINIEQIVLSIDDNKDNQAMFESYGIPVFDPLLQ
Ga0209232_10294996F002344N/AMLYDKLKPHIKAKMEKETKQYPSVNWLIDSIKTKDHYSDLTIDEIRSICTFGDVWYYDLTQKELIWGDWLTIK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.