| Basic Information | |
|---|---|
| Taxon OID | 3300025132 Open in IMG/M |
| Scaffold ID | Ga0209232_1000745 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18909 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (20.51%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016813 | Metagenome / Metatranscriptome | 244 | Y |
| F073567 | Metagenome / Metatranscriptome | 120 | Y |
| F078600 | Metagenome / Metatranscriptome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209232_100074530 | F073567 | N/A | MNNLTKKQSQEITNLYEMLSNGWHYTNHPMHYKFMQAHNDLPDYKE |
| Ga0209232_100074531 | F016813 | N/A | MLDLTKLPELNDNHEYLIDNEDYSELFERLNYNTEDYLIVYSFIHNIMKVSKELIRYNVEFSHHSCHLSDESYLLININQ |
| Ga0209232_100074534 | F078600 | N/A | MYNPNNPSNWSWKKAFEEHAKYVHQSDTEQQIINHLAGYPGESHGEYVKLSKDKQENLYEILTQIL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |