NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209128_1016393

Scaffold Ga0209128_1016393


Overview

Basic Information
Taxon OID3300025131 Open in IMG/M
Scaffold IDGa0209128_1016393 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3381
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077393Metagenome117Y
F101190Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209128_10163933F101190GAGGMFNVGDLVQLNYSEHIGIVIDKSDRPREIYSYHIKWAVGEPYTWELSQNLILVAGVNNEKRI
Ga0209128_10163934F077393AGGMKNSWDYKKGDLIKVEKLGWPIEIGIIIRCVGDQYEPHPQTPRKYWEWVGTSGRRQFFFEVKTPLQEDFKIKVLARL

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