NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1007938

Scaffold Ga0209348_1007938


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1007938 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4386
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025520Metagenome201Y
F036270Metagenome170Y
F058913Metagenome134Y
F089953Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100793815F025520N/ASFHFVHFISQFIMTFDEKFFILRSTSYIKNVPQTLCTEFLKELTDSDENLKPHVSDLDTNVTYYGKPSIKCTIPTCFIEIEYKTSDGHYLITHEVFLYEEDYPTFADLVAYKEKLAYGFASQVTQETKDIVEAFHNGYGCECLSSGDY
Ga0209348_10079385F058913AGGAGGMKLTKEEARWLDDKWNDFYYYFDVESMYPKDQEIFKNIGKKLSEVKQ
Ga0209348_10079386F036270AGGAGGMYIESTDKQGVFKGDEQGHKLLSLIDDMGWDFDRFSSSGQETYDKICAILATVKEVEDET
Ga0209348_10079389F089953GGAGMEDLINEQILENIFEGYEIYKVTLDDNVESIIKYAIRERSCFADQDLKLVRHNDMSFFPTLKDAEKALYEIVQKRFEEQAQ
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Institute for Fundamental Biomedical Research
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