NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1001948

Scaffold Ga0209348_1001948


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1001948 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9905
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (10.34%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001740Metagenome / Metatranscriptome643Y
F009959Metagenome / Metatranscriptome310Y
F061902Metagenome131N
F077194Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100194823F061902N/AMKNSDWILYYSQKWLDEEINSRGLKNEHQLYWATLCDSRPKDTKVEG
Ga0209348_10019483F001740N/AMYNVNNPSNWSWSKAFDEMAKTVNQAELTQQCINHVLNYTGEANGVFMSLSKNQQDDVYEILDQII
Ga0209348_10019485F077194N/AMAKKNMKQTLTILDFGSGEVHQYHNVNYEKYEMELDEFISVQLGYNLNEVEYMFHNDRIIYDLTNEL
Ga0209348_10019488F009959N/AMTEQEVIDKVCDRVVNTIYNELDYYMFEELGFMETNDEYVKYADKLIKKILKNLTK
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