NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1000062

Scaffold Ga0209348_1000062


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1000062 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65319
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (20.65%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001740Metagenome / Metatranscriptome643Y
F008944Metagenome / Metatranscriptome325Y
F009959Metagenome / Metatranscriptome310Y
F016813Metagenome / Metatranscriptome244Y
F077194Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100006263F016813N/AMNINKLPQLNNNHEYLIDNSDYSELFERLNYNTEDYLIVYSYIHDIIDVVKELINYNVEFSHHSCHLSDESYLLINYKEENLHI
Ga0209348_100006265F001740N/AMYNINNPSNWSWSKAFDEMAKTVNQAELTQQSINHVLDYPGEANGVFMTLSKSKQDDVYEILNQIL
Ga0209348_100006267F077194N/AMAIKNMKTKIYSNQTLTVLDFGSGEIHQYHDVDYEKYQMELDEFVGVQLGYNLNEVEYMFHTDKTVYNLTLEL
Ga0209348_100006274F009959N/AMTEQEVIWKVCDRIVDTLYNELDYYMFEELGYTETDDKYVEDADKLITKVINELIK
Ga0209348_100006280F008944N/AMKKFNQMESNLICDALQFYVAQVERDILQMEKDGKRSIFAQGFYTQVSKELKDKVKTMTKKQKV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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