NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1000295

Scaffold Ga0209644_1000295


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1000295 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10315
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010273Metagenome / Metatranscriptome306Y
F043075Metagenome157Y
F077765Metagenome117Y
F087171Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10002953F077765GAGGMPIYSFISESGEAIEELVPSGTKRVTREGVNYARSIGSEGFSLTGQAVGIPPQAEQVKDGYYKLEQSEGSRFLRQSQFTTKQIKRAWGF
Ga0209644_10002955F087171N/AMATEYKWTRLEPLVKTEDVSGSPQKVVETLVCGMTAVSDDGYSAYIDTAVSTPVDPSSFIPFDDLPESWAVDIASGVAEEKGWRDLLDAQIEAARLRPLPAKFPWQQTEPSE
Ga0209644_10002956F043075GGTGGMNDLEWLKVFGVNGGVLATVSLSDLELVLKIVLLTLTCIWTACKIIKLLKEE
Ga0209644_10002957F010273N/AMAIGGLLTVVATEWLNLSPAVAENVIGAVIIIVPAYIGGQSIVDALKEYSAAGKGK
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