NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1020871

Scaffold Ga0209535_1020871


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1020871 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3318
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000589Metagenome1006Y
F050006Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10208713F000589AGGAMPHSKHIKGDRAELIAAEYFISLGYSVARNMSQHGPVDLVLIDEDGTGDVILVDVKAISLRTKNGYKVNRSPTKKQKELDVQLIFVDLDTKEVLDIMPSKRRTKQTNVKKTDLTNVVDIGRYKQWMEKDVR
Ga0209535_10208714F050006GGAMKSMIWVGLMMVLLTACTKDLSFDPTTSVLKWVITKDKDAAQ

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