NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1013054

Scaffold Ga0209535_1013054


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1013054 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4542
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019754Metagenome228Y
F020110Metagenome226N
F022313Metagenome215Y
F023484Metagenome210N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10130544F019754N/AMNHDKDDFMLPSELEPAWPPSDDDIEAMELDAYDRQKLDDLISEELWRESLPSVPTPAELNPNLK
Ga0209535_10130546F020110N/AMSTHLEVKARLSYARAMLERDIPTNTVATLLSSKFVVCRSTAYNDIQAAQAEMNLSDDGPSTLESSEPINTDSVLAMLQHRLEVCVATGDDKAVCSLIKAMNQAKQWNGYRTQSASPFT
Ga0209535_10130548F023484GAGGMNINTKDGGFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNLIKEGDGLMLSNSCDPDQVIDGDEVAKCKNFIRNHS
Ga0209535_10130549F022313N/AMTYHYQPQQEYELTKLQRILKELEDIIDRESKRHIMDEQLTHSMRELLQYEVIPMLEAEVNFDPTPQY
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