NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1001180

Scaffold Ga0209535_1001180


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1001180 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17958
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (95.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006939Metagenome / Metatranscriptome361N
F045197Metagenome153N
F046471Metagenome / Metatranscriptome151N
F070310Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10011802F046471AGGAGGMEECQECHGEGMVEYERWERYGDTYEPYAEYSVCEWCLGTGQLESDDDDCG
Ga0209535_100118028F045197GGAGMIYVYMVVLMLMKDGEPAFSVRAPNMTFTTEEKCQAVRELNMQHLLETKPVPEARFLSQCVGLPFNMKDKGDL
Ga0209535_10011804F070310AGGAGMTEELEKELRMLGVLDHKTPAVEIDKEPIWIRDDDMWEIDT
Ga0209535_10011806F006939GGGGGMSEAKCWRNILDTDTESFHTESQLTRRDKMALPENMVTNVLSENQNQFITVKFLTKDDEVRVYNGRMNVIKGLKGNERGKIAAAALKAHGYVTLKTSEGYKCFKMDRVLAFKAGGRHVFGLGDEIV
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