NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1004574

Scaffold Ga0209349_1004574


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1004574 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6083
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065672Metagenome / Metatranscriptome127N
F071262Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209349_10045742F065672AGGTGGMLKLMPFLLLLAGCTQIEALAVSEGDNAFACLRGESAATAGVFGGNLSGITVEVPATVDTSQWSAQDWATLAEICD
Ga0209349_10045744F071262GGAGVWLMIKRIAASKPSPLVKDDLQDVLITLARIDERIVTIFNRQALIETRVNSMDEKIQRMSPSVKFGERVFWIIVAVIAAGLGRIY

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