NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209349_1004175

Scaffold Ga0209349_1004175


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1004175 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6446
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053550Metagenome / Metatranscriptome141Y
F070556Metagenome / Metatranscriptome123Y
F074050Metagenome / Metatranscriptome120Y
F077815Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_100417513F074050AGGMKRSYIKQLVKEEIKNIKAEATTRVVKKGTVTDNARLAMLLSSLGKRAKGSFQKRKVVSQVIMALASSLEITPNEVLRAYLDYKRDAKGDASTKVKKDD
Ga0209349_100417514F077815GGAMQGKDLKNRLKQIIREEVNSALNEESYKFGTLADPKDMDPNDPMVKVTGFASLNRSSIRNQIVDRLSGALATAKDAAKGGPTSYEAYKQLQDLISDAGILYKLIGAELDTANQLEGKRLKGGRRSIPIPKQ
Ga0209349_10041753F070556N/AMGFHKRYINDEQVIELYRTQGNQSIIDLYTKGVDVVITSGDLSEHILDILNIGLLPETNKWNLISELVSKASIKKGHK
Ga0209349_10041756F053550AGTAGGMKSIMTLNFHVKDLDHFNMREEIKKARLKKKVMDNYPNAKVEYTNTGVQIMSGDIYIAEEFYLPTTTDVEKAWEYAALACKTRQQFNRTHPMRMDLSDIESKINRINKRRGPRNKRK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.