| Basic Information | |
|---|---|
| Taxon OID | 3300025108 Open in IMG/M |
| Scaffold ID | Ga0208793_1055541 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1205 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F062681 | Metagenome | 130 | N |
| F087047 | Metagenome | 110 | N |
| F093732 | Metagenome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208793_10555411 | F087047 | AGG | MTKFKERFIFSFNSDLHPDTVLWRYTDEAEHQANNHKTYKPKVSDLVIMNQELPKQLKIDIRHELLSSILQDEAELPQKRL |
| Ga0208793_10555412 | F062681 | AGGAG | MTEFTNAVEKQKGLQAYEQWSQQIRYIHSDGWEGTRTIVYNDGRRELYNLKNNQLINQEPRKTRRRDLIDSNAFTKFLHRIGFYHD |
| Ga0208793_10555415 | F093732 | N/A | TIHKQLEEMLQDMPTQERLERTLARIEQYLAHTDEVENLNHVNFITEIKYQLEDITNKEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |