NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208793_1029284

Scaffold Ga0208793_1029284


Overview

Basic Information
Taxon OID3300025108 Open in IMG/M
Scaffold IDGa0208793_1029284 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1846
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F001217Metagenome / Metatranscriptome745Y
F008577Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0208793_10292841F000352N/AMKKIELSESDCTFVHYVLRMYASQTSGLDSSDKEEIREVASKFK
Ga0208793_10292842F008577N/AMKLTKSEISAIADHLDEIIGNNFHDAMYNVIWQRDSDEEVEVSDEDILAIKEQLKRIL
Ga0208793_10292843F001217N/AMSRTKFNGFEKYFIQTALKAAIEEAEQDIKKLVSEGKRPIFAEGYFTMVGNEIIEKVNHMTLKKYQD

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