NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208793_1001904

Scaffold Ga0208793_1001904


Overview

Basic Information
Taxon OID3300025108 Open in IMG/M
Scaffold IDGa0208793_1001904 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11387
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007417Metagenome351Y
F008595Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0208793_100190417F007417AGGAGMRYTLQVQLPSLGWVLAIKTSDLFYMAKKRARLIAEGHKVKLTKEKK
Ga0208793_100190423F008595AGGAGMSKDDNKMENQEPVIITYNGTEYRASDLNEEQMALAAKLNIAGKKLARLQEAYDDYVITDEYKNLCIQSFDRAINAEDVAEVVEEE

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