NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208159_1014685

Scaffold Ga0208159_1014685


Overview

Basic Information
Taxon OID3300025101 Open in IMG/M
Scaffold IDGa0208159_1014685 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2001
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000993Metagenome / Metatranscriptome811Y
F047023Metagenome150N
F057681Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0208159_10146851F047023N/AMNNIKFTNEVLSRIYSQLALGNGIKTILKDLDLSWEGFRQLMHKKPKVREQYELAKQDGVDYLLSESATELKKAIEDFKANGKGDLATSHLIKEAVALTKWKASKLLPKYNDNVKKLELANHDNQPLIVKWSDK
Ga0208159_10146852F000993N/AMNKLHHTEYKKNYKNYILGTIDEDGDGKPLKTEQEKINYIFDRFNSEYGFMVERVGKQKAMTEWLQGLALDIEYWNDNIVPLAIKMGSIDENPNEKLQAKVIENYWSFMANVILWFEPKK
Ga0208159_10146855F057681GGGGGMKKYTKKLFLDYASAFDYYDEMKETMQSWSLKDFHKFYGFTHKDWESGKEIKYKG
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