NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208159_1002741

Scaffold Ga0208159_1002741


Overview

Basic Information
Taxon OID3300025101 Open in IMG/M
Scaffold IDGa0208159_1002741 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6010
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012834Metagenome277Y
F043684Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0208159_100274114F012834N/AMEERFTDLAWTTGDFNKATTSPSQTALSNWMWYNKYQLFPYLKFKQEKPSISFKAGTFVHDWFQNILIGQAKIDDVELAFKTHIEQFEFEEKHKMKAQFILKKIKGYVERHLEAINEVSDNFSGWEIEKPFSDWYDNKYMGQTLNLANEGYIDCVNDNEKKITEHKNRFGNVSLKPLKKPKKDDKLNENRIGDWVYSKSQVIKYPQFTHCIQTAIYSKHFDYKYKPYLIYVGDSDYTIFTPDNCWELTLKGLQYFFKKFIQINIQRQEMLRMANGDMRKLAMIIGVDWSEIRNYKSNFLLENYHEEDMQRLEDFYEKL
Ga0208159_100274115F043684N/AMTVQKVDLNWEEILSGASTGIVREVESLRQNIQWGHGAKFDRYQKWGKSVSGTLCEMALAKKMKSYFSHSVNNFHGKDLIIDNKPVQVRSQLYSKPNKSLIIRQGHKPEDYYFYVGDDCPTFYFYGYILAKDCRKYGNWTDFNQDRPHVWSVPIESLKPITEFINET
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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