NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1004377

Scaffold Ga0208669_1004377


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1004377 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4478
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014329Metagenome / Metatranscriptome264Y
F027811Metagenome193Y
F029432Metagenome188Y
F065133Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0208669_100437711F065133N/AMKKITRTALALSILFSSCTKEPSWARNYSQPVYANDPTDIQGGGNISWYEGMSDEECIKRIKGFDSYDPSKPIFLSPTVYDMSHNDHDDISVNSPNPDYMLFPHVINSMSNTWSHDYINEFKALKQEHGNEGVQMFLDKYLDGDSTLGMKLKPLWF
Ga0208669_10043776F027811N/AMIEYSEIELREMISNLRLVKEMSNKFGLQDKSEIELTKYELLLETHTNNKYKEIDEWLSKLIDKNGTTKY
Ga0208669_10043777F029432N/AMNGKGQLVGWVVVLGMWTSCGIGLNCIKTQEQGNNEVVNTAEDMIEWIGHDLESGKVDSTIADTYITNLEEIITDSRK
Ga0208669_10043778F014329N/AMRNYSITRRKGEWYHAKVIDSYGSVFDNYFEHAHEANDWIYYIWENEKPPLTKKEEMDLLANAIWGCTKLDEELGLLKGNRDNLD
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