Scaffold Ga0208011_1004010

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208011_1004010

Scaffold Ga0208011_1004010

Overview

Basic Information
Taxon OID	3300025096 Open in IMG/M
Scaffold ID	Ga0208011_1004010 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4586
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.405	Alt. (m)		Depth (m)	120
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043965	Metagenome / Metatranscriptome	155	Y
F050424	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100401010	F050424	GAGG	MAIEFENIYKDRVIDTIHKLLKQNLVSIPIVFDEHRGQESFLIVPESDTFIDYASNVHIREFTTTINYQLRKGGEYTKENQLNRLTMVAEIVKRLLFNNRNYESGNITNWYGGQVSSVEYTRDEDDETISNVIITFQCNTNEVIS
Ga0208011_100401012	F043965	AGGAG	MAVSGKVYAKSDFSVGIINKNATAFETAAADDAAYELLPVVNVSAPVLNLVESGEIRSNNAGMVELDIDQFRTTKGGFITMDFEVPAERDLIVRLLANVLQDHDESGSGPYIHTIQATSSAALSRPDFTGSSSSGIPSIFDIGLY

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