| Basic Information | |
|---|---|
| Taxon OID | 3300025086 Open in IMG/M |
| Scaffold ID | Ga0208157_1007405 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3811 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -12.999 | Long. (o) | -80.801 | Alt. (m) | Depth (m) | 90 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004523 | Metagenome | 434 | Y |
| F011658 | Metagenome / Metatranscriptome | 288 | Y |
| F021776 | Metagenome / Metatranscriptome | 217 | Y |
| F022645 | Metagenome | 213 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208157_100740511 | F004523 | N/A | MEYLSTEIKSAREAMTIFKILGIKDVTTDRQRKNGTTVYELPIQQMWQSLTPRPLRFATYKAGYVRNVSEYNSSPYQINKTKKVTYDSGMTGVDRVMIPHWEDRLIYLAKFIIKNYYQKPTYVMNDYVIKCLKEAYYEQNKTSLPFGEEGDMHSPDIKVIINGHRYNLS |
| Ga0208157_100740512 | F022645 | N/A | MKDTNEIEKQLQHKADKYIEQKAKEMFEIHREIAMYLGGRLPTYIDYITDFTEYSRDIMANRDNYFTSSSPSSMELKFQKDLEKNYKHKLVAKYTKELIMKLDIFE |
| Ga0208157_10074058 | F011658 | N/A | MKTLYQQLKPEIKQTLNEQEEKYPSLVKGVKIALKENYLWSHLSIGQARDLIYFTDHAYASLCSYDWSYGEKFLIADE |
| Ga0208157_10074059 | F021776 | N/A | MTKEELEVKISTLQTLVTQKNEELAQYAADIERLNDELKDLNKPKLTGSQLDELYQAIEQGIESFDFDDCDNYETDFHIDYDNRIAIESMSFHNADELLRVVYNEARELFAEIKEDDNQLNQD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |