NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1002361

Scaffold Ga0208157_1002361


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1002361 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7917
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004493Metagenome436Y
F006217Metagenome378Y
F009070Metagenome323Y
F027536Metagenome194Y
F029594Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0208157_100236110F006217AGGAMIEILLAMVEEQNPIHKYCMDKHEHWTGRAACVQELRHAQRKMEVERLRQFLKDNPHYKYPGMALPNGAIKPLDVCWGSDKTYYIGSDKVKRSKC
Ga0208157_100236113F029594GAGGMLPDEMEAEKNRKLLLSQADTIEILKRNVRDLQGQLNQAQIRITELKKDEV
Ga0208157_100236114F004493AGAAGGMQNSVTKNNALDFDDEQWSQLINSNGLLIMWFIEWNKKVEEGKRLQYYQTLQIQDFFKLKYNQSAGCDPWHMKDSKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPTKSGGHHIVRMD
Ga0208157_10023614F009070AGGAGMRLAIVIDVDGDIMYVPEGKVFPNFPKPKLFYNLKDAQEECEKWNTGIIVDYDNNNKTVPIVRSFDDEERRRSIEREEMNKDDGTSTSKDATQ
Ga0208157_10023618F027536GGAGGMRVSPDGWRYKVIPIDRVINDCKRRADDAWWDGNDDEARLHEQEQKLYELDKEEGILWVPNF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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