NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208668_1002511

Scaffold Ga0208668_1002511


Overview

Basic Information
Taxon OID3300025078 Open in IMG/M
Scaffold IDGa0208668_1002511 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4611
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.61Alt. (m)Depth (m)250
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004867Metagenome420Y
F018194Metagenome / Metatranscriptome236N
F028834Metagenome190Y
F051450Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0208668_100251112F028834AGGAMKMIKIDIRAKNVAYITIGKWVIYVDDSTGEQIIDSWEE
Ga0208668_10025112F004867N/AMKKIESIIKNGDEFKITFYPQNKNYDIDEHQLQSDTRFAKWDSDCFFCKEPKTKNTSPYIKFFDVKNDQYRTATTKHRAVSIFLNNKNYVWKVY
Ga0208668_10025115F018194AGGMAKDERLKLYERDHFDDKVDKKLEPVIEVEELRIKATVQTILNKGTKAFAKNIGADKVINALVEAEEKLKRASRNAYIFFDQSAKKSVMFSKLKEYKFDKDDRDSITVKNCQEQLEKWAEAQAKQLAEKTPQGQRLFFLKAVKERMKDMVKEASVPSELKEQLSGLMKLAGVSWDTKLPALPPPKSK
Ga0208668_10025118F051450AGGAMEKEIEDIKSLTPEEMARLEYVEYLNDMQSQVIKDLEEASA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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