NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1010240

Scaffold Ga0208667_1010240


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1010240 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2167
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F024797Metagenome / Metatranscriptome204Y
F040126Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10102403F040126N/AMKKVPLFEDFIPVGFAPSDSASFSLGGTNRAETGYDMNAIVGPVQTLGNHVAEQANSYESNDNAEHTAEAYIKEAKEHINNKIDEACESYSAMSESTLNEGTDISSWNQAGIKGSDNAQITTFVGPKDIEDFGLGRKCMQINIGRNYVQLNPADIVELKDLLKNYKV
Ga0208667_10102404F024797N/AMSEFLRTSTGRKLLEKDIPKLASVLERIADQMEIKNRLEEKKFRLDEKIKKLQIKDINEK
Ga0208667_10102405F008425N/AMKKDKDITYKQFIAHMDKGNKVYMKKPRSWQKVWFWWESKKEKWFLNKAFDKREDGIVKPEPSVWITAKQMESHMDHMVRMGYKYYIDE
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