NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1010176

Scaffold Ga0208667_1010176


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1010176 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2179
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F008022Metagenome340Y
F022645Metagenome213Y
F072518Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10101762F022645N/AMKNTNEIEKQLQRKADKYIEQKAEEMFEIHRKIALYLGDKLPNYIDYITDYSDYSSDLHANRGKYFTSSSPSAMKLKYQQDLAKNYKDKIVVKYTRELISKLEIFD
Ga0208667_10101763F004523N/AMEYLSTEIKSAREAMTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLNPKPLRFATYTTGYVRNVTEGLSSSYQINKTKKVTYESGMTGVERIYIDSWEDRLIYLAKFIIKNYYQKTTYIMSDYVMDCLREAYVRDYNNQPSNRLPFGDEVQVIVNGHRYNLS
Ga0208667_10101765F072518N/AMTKFKAQFKNETTLKQLLSHAEEQYEHYKDYGFMQDANYWQAKAQDYRAQLYALYHEREQFDKLAQI
Ga0208667_10101766F008022N/AMTTTELQAKIEALQAALDTKTQEQNAYRGQIDTLKKQLKDLNKPKLTPLQFDELHTAVEEAVGSFDFDDCDNYETDFHIDYDNRIAIESMSFHNADELVREVFNQISELFAEATHPENDNQLNQD
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Institute for Fundamental Biomedical Research
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