NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1009918

Scaffold Ga0208667_1009918


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1009918 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2220
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014147Metagenome / Metatranscriptome265N
F051922Metagenome / Metatranscriptome143N
F065800Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10099183F065800N/AMETKFIPTNPEELTSFDSILKEFNAINDSAYVFTDNYSLNYDVYIGSESSADGYELWIIDVDREGPIIGENVYYYQPSAYDIFNHLGGGWRDDLVVYTEIEFYELEEYMINELCTNYDNYLNELEDAK
Ga0208667_10099184F051922N/AMKRLSLYERLNPDVKAKLIANQLDYEFTVGMVIAKLNSTLFWDELTVRDISNLVVFSDSDMPADATTMLRGDSNLIQPQNEVI
Ga0208667_10099185F014147N/AMTTIKNTFEQQLREKFGVNIMSTMGTSSAILADGANGTDYLDYHDTNAGWIFGVHPELQAFIDAHGWECEWQNSEVLNLYPGHDWTGDFSEAQLVSHWNAMCDYITAPQDHIYANDDEAFEMLQLTIRQTVAASNNDRYNFDDKWLTLDGYGNPMSFNSLLNHLDVPELEEYLIAHALI
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Institute for Fundamental Biomedical Research
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