| Basic Information | |
|---|---|
| Taxon OID | 3300025070 Open in IMG/M |
| Scaffold ID | Ga0208667_1004818 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3753 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003492 | Metagenome / Metatranscriptome | 483 | Y |
| F016667 | Metagenome / Metatranscriptome | 245 | Y |
| F025034 | Metagenome | 203 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208667_10048181 | F016667 | N/A | MKINKNLRRVVVTLVLIGAGFVYGKQTGEQEILNRWEDRWFDSDWYDTRSIEDFLYDTDYSIELGE |
| Ga0208667_10048184 | F025034 | N/A | MDSKKAYEMMKEEYIDKEASELCNQIEKSLERIISYDDGMLDDIVLNKIKAQAIKLLKEWHL |
| Ga0208667_10048188 | F003492 | N/A | MAELLTDDIIIEHLEKDGFMEEPDGPWLLEYIEEHHGGKLDNTSDYVDDKHSLKIYSESTYDSYDIFWCTHDDRPYVSQDGYYYEDYSDWSDRALDELSSGGDVWVDPNLWSDMEWDFNHRLEEWWQDVYQELFDERKEELLDSGDYYEEKKD |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |