| Basic Information | |
|---|---|
| Taxon OID | 3300025070 Open in IMG/M |
| Scaffold ID | Ga0208667_1002783 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5504 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010829 | Metagenome / Metatranscriptome | 298 | Y |
| F041432 | Metagenome / Metatranscriptome | 160 | N |
| F051060 | Metagenome / Metatranscriptome | 144 | Y |
| F065101 | Metagenome / Metatranscriptome | 128 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208667_100278310 | F065101 | AGG | MNQIGSIKRIDQYERVYVPKKILEDLGLEKESHCIWVEEDFGYTLKKVNVTIEE |
| Ga0208667_10027833 | F010829 | GAG | MAGTLADHRRLREEQGLYKEDPGEGRFTKTETKYIPFLGNNPSEEKPAIYTGRFKVTDGSIDLEAKRSGGKLSITVECDEKLNRAVFECVERFVEAIFNGTAREIKEADPEDSQITKLKKHVEQIEKELADKNETLEKINESLGIKS |
| Ga0208667_10027835 | F041432 | GGA | MAEQATELKLVGGLFRNKSKKGDVYYSGKGEDGTQYVLFRNAYWKEGEENKPYFRLHQKVPKGSSTSFND |
| Ga0208667_10027836 | F051060 | GGTGG | MVDAKHGTLLGKCAIDGQPIYEGSGFRSQFCTVSNGKWISGDTLLKLYQRTFEAFLAHNKDAEKEKAVLLDRLEKYGWQTDPETGKLTKVLNRSEEME |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |