NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1002118

Scaffold Ga0208667_1002118


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1002118 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6668
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004646Metagenome / Metatranscriptome429Y
F028770Metagenome / Metatranscriptome190N
F067630Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100211814F067630GGAGMAHLDIDTTTLEVATRALALFKSEYPDRITVWAETAEGQLDIKIGSISKHKSERGGAMRHHVYFHKTEALMEV
Ga0208667_100211815F004646GGAGGMIYAIAEVPHEDYDNYDMLNKLFHALSPHGWENSSWKNDTCPSLIKEEIHGNACRIFVDYVNPDMREDPRWGLLSYTVEDAEGYLVIQEQFDNVDKLIIYLTEEVN
Ga0208667_10021187F028770N/AMVGTLGVIMVCMSSLAEHCQVLTSPYVFRSEEECQASTVAEARKIMDMYSHAVITPTCVALRYNGEPA
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