NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1001425

Scaffold Ga0208667_1001425


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1001425 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8786
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008424Metagenome / Metatranscriptome333Y
F016667Metagenome / Metatranscriptome245Y
F025034Metagenome203Y
F100986Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100142512F100986N/AMRRKLYEHLISTNVFGVRDKIKQFKKQRKRKNEKI
Ga0208667_10014252F016667N/AMKLNKNLKRVLVTLALIAVGFTAGKQQGEQEILNRWENRWFDSEWYDYKSIEEILYDSTWDNYMWTNND
Ga0208667_10014254F008424N/AMEKKVNILERLLYLTIICGFCFFCGVFYTFYKIDQRTWNEEILKARDIETRYINYPKQRNYKQDDLERIIYGQ
Ga0208667_10014255F025034N/AMDSKKAYEMMKEEYIDKESLELCNQIEKHLERIITYDNGMLDDIVFNKIKAQAIKLLKEWHL
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