NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000622

Scaffold Ga0208667_1000622


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000622 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14625
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (96.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001153Metagenome / Metatranscriptome764Y
F008816Metagenome / Metatranscriptome327N
F039144Metagenome / Metatranscriptome164N
F070007Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100062210F001153AGGMSVHDKIPYSEVIAKKVREGIRSGVSVKDILSSIQKYQNAPSSTATFYKLYGEDIAEEKASIVGAVGSVVVQQALEGDFKSQELFLRSKGGWSPTSTVNEVDQVEDPDVDESAIDSLMNLLGKTRSNDYSPDS
Ga0208667_100062216F039144AGAAGGMLFRMNKEYFCECCEFYKTFEEMHGDNDTICAVCQEGQEEWEYINSEEEDD
Ga0208667_100062220F070007GGAGMNNLPVEAQRELRMLGIMIPTEDEVEAEEDLIVAQLRSETRALHLSKDWYNDPRDENGEVTF
Ga0208667_100062224F008816GAGMLFYTVLVLSYTLNGDYLQAKVIFPSYRACGDALPAYYEPVYAIDRDAIGQCLKTEVISASIKPKRRPL
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