NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000296

Scaffold Ga0208667_1000296


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000296 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22601
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (93.18%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005350Metagenome / Metatranscriptome403Y
F014905Metagenome259Y
F025716Metagenome / Metatranscriptome200Y
F048584Metagenome148N
F049548Metagenome146Y
F060810Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100029618F025716GAGGMMQDKEMERMINAAGLIGAIFGFVSGAGLMALVGIIF
Ga0208667_100029620F005350AGGAGGMEDWIKCPECDGEGEVEHDVWVRQSSTWHGDFGSHMEECDVCNGIGQIDPLEQDE
Ga0208667_100029627F049548AGGAGGMSKVEKQIAECTHDFLIALPESMKNGHLGAVICTIFEAFDLDHDNRAHICEGVLNVMLEAELRGDERAAQAAEDVIARAAAKARK
Ga0208667_100029628F060810GGAGGMSIKVGLPGVTFNALCKITEIDREFVGSPDYMGVAQFWDWQHPQKTLLSRASVSARRKIHAALIKDGLDLNGDTGIHRSIISTVLDEEGQGL
Ga0208667_100029635F048584GGAGMQDYDLTQYCNDIAEDIARDASDIEQATDWAHESADGSEYVIYYAKAHAVCQNCNIDQGEEFFSECYSGEHGKSYDEIACIMAYGEINARICARLWEIFEEREEEAA
Ga0208667_100029638F014905AGGMKPIPFHKLSPKMKNVRMNQWIKTYINKGLTLEDAQYAARWRAGHWKLSARMEKVLEGIEDV
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