NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000256

Scaffold Ga0208667_1000256


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000256 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24775
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (51.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056968Metagenome137N
F077252Metagenome117N
F077932Metagenome117N
F090340Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100025613F090340GGGGGMPKEYSTEKIRSIGIDPNDLSTTLYCHWEIEKVEYHLDRMVSYLVENRLPHALSRIVIDDIEDARNELKEIFDYLYKKEGRLDK
Ga0208667_100025626F056968N/AMNNNPDLVHKCLDTITPGWQAVLVATVTEDGFEYDVFNKMDEEHFQENLAILLALVAKKSMQELEQIDWTNN
Ga0208667_10002565F077252AGGAGMKKLTVSEVSEAIELLTAAQTFQSQIDVITAKITRLMGGVKDDLIHELVDQAVLNKESVEWIVEEVQSWEKYSQELKL
Ga0208667_10002566F077932GAGMIQEDFKELALQVKEMLSSDSGYVKESVAPMIGGGFTGDLMPVGYHVFPARQVCRTELGKTLMDEVTMFHQKVIDIDDDNTVIVYAESSLLPNETIRILESWMQRFLEETMYEL
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