NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207887_1013428

Scaffold Ga0207887_1013428


Overview

Basic Information
Taxon OID3300025069 Open in IMG/M
Scaffold IDGa0207887_1013428 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1275
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003515Metagenome / Metatranscriptome482Y
F019330Metagenome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0207887_10134281F019330N/AIGPETEDHNRTVDKTNWGWPVSPDAEVDPYHVEYK
Ga0207887_10134282F003515N/AVKWLIPLLLFSSITYGGAPEGMERQMIPFPAMCLPATAEKHHFAVLMGALIADYGVHISMTFSATLDQSKRVAIIENPATDLAGVLMIMDEQTCIAFSGEDRQVYIRPPDHPVGTENEDPKT

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