NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207887_1009132

Scaffold Ga0207887_1009132


Overview

Basic Information
Taxon OID3300025069 Open in IMG/M
Scaffold IDGa0207887_1009132 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1526
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015975Metagenome / Metatranscriptome250Y
F071262Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0207887_10091322F015975N/AMTFAQATIGCVNNLWARMMFFKSAGDIEPGHTHQFDHMTLLAYGSLEVTVDERTTVFKAPHLIYIKKGKEHELVALEDGTVAICLHALAPDIEVGDVLDPSMIPSTKEEECGYSNNPL
Ga0207887_10091323F071262AGTAGGMKSDLQDVLITVARIDERIVTIFNRQALIEERVNSMDEKIQRMSPSVKFGERVFWIALTVVAAGAGRFY

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